Is there a list of all pairwise alignments?
Answer:
The list of all pairwise alignments in VectorBase includes a link to coverage statistics for each alignment (e.g. Anopheles gambiae and Anopheles coluzzii) and a link to an example region (e.g. Anopheles gambiae 2L:2269888-2519887).
Alignments in the genome browser are shown as images and in text format.